Add merge_GSEA function by DanielGarbozo · Pull Request #6 · BigMindLab/OmicsKit

DanielGarbozo · 2025-02-13T06:37:01Z

I added the merge_GSEA function to obtain an output tsv file from all collections.
I change the documentation as well.

danoguevara · 2025-06-03T06:11:56Z

Make sure the imported packages for your functions have the proper syntax within your function.
You are missing adding the dependencies to the DESCRIPTION file. Do it by applying usethis::use_package("pkg1").
Make sure to automatically generate the .Rd file of your function with the devtools::document() package.
Avoid parsing arguments into the function (function.R <arg> <arg>) like a CLI tool. R functions are better used when applied directly like this: function(arg1, arg2).

Refactored merge_GSEA to use function arguments instead of CLI parsing

Adds plot_global_GSEA to the NAMESPACE file so it can be accessed when the package is loaded.

Document plot_global_GSEA generated by roxygen2

DanielGarbozo added 2 commits February 12, 2025 12:58

Add merge_GSEA.R function

f517979

Add documentation for merge_GSEA

a863059

DanielGarbozo and others added 5 commits July 24, 2025 13:49

Update merge_GSEA.R

68b698f

Refactored merge_GSEA to use function arguments instead of CLI parsing

Add new function: plot_GSEA

9f5b76e

Update NAMESPACE

29427bc

Adds plot_global_GSEA to the NAMESPACE file so it can be accessed when the package is loaded.

Document plot_global_GSEA with roxygen2

d8c1b6d

Document plot_global_GSEA generated by roxygen2

Merge branch 'main' into new_GSEA_functions

d3988f3

danoguevara merged commit 7fe67c7 into BigMindLab:main Jul 26, 2025
0 of 5 checks passed

DanielGarbozo deleted the new_GSEA_functions branch August 4, 2025 05:34

Provide feedback